rs32942116 SNP Detail

Summary

• ID
  rs32942116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100805701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCAGAG AGCCCTGGGG
  ATGCTCTTGT CTCTATCTCC CAGTGCTAGA ATTACAAGCA CAGGGTGTCA CCATGGCCAG
  TTTTGATGTG AGCACAGAGT GTTAACGGCA GAAGGGTGGC CTCTCCTGGG ACACGCCTGC
  TGTTAGGGAC TGTCCCTGTG GCCGAGTTGA TGCACTTCTC TTCCTGCTGA AACCAGTCAC
  K
  TGGGGAAGAG TGGCGCCCTT CCTCCTCTGC CTCCTTCCCA GATGCTGTTG GGACAAGTCT
  GAGCACTCTG GCTGATCAGC AGTCTCCAGG CCTCCCTGTG CACAAGACCA GCCTCCAGAC
  TTCCCTGCTC ACAGTGGCTG GACTTTTTTC ATCTTGAGCG CTGTTTGTCA CAGTGTCCCT
  CCCCACTTTG ACTCCTGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47235926	NES11413929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32942116					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47235926	NES11413929	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100805701 () rs orientation: forward

Symbol	Name	Function Class
Dglucy	D-glutamate cyclase	within coordinates
Rr403460	regulatory region 403460	1797 bp upstream
Rr471349	regulatory region 471349	1796 bp distal
Rr471350	regulatory region 471350	1263 bp distal
Rr471351	regulatory region 471351	within coordinates
Rr471352	regulatory region 471352	421 bp proximal
Rr471353	regulatory region 471353	1961 bp proximal