rs32942942 SNP Detail

Summary

• ID
  rs32942942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53426160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAAAT CCCAGTTCTG
  AAGAAGACAG GGGTGTGGTT CTCAGCCACT GTGCTATCTG GAGGTGTTTT GCTTGTCACA
  GCTAAGGAAG AAAAGGGGAG GTGAGAGTAA GCCATTGTAC TAGATAGGAT CCAGGATAAA
  TTTCCCACAG TGCACAGAAG CATCACACTG TGAAGGCTAC CCTGCTCTTA GTCAGCCGGT
  Y
  ACCCTGCATG TCTTCCAGGA ATACTCCCCA GTCTTTGGCT GACCATGTTG CTTTAGGCGG
  GCAGGTCAGG CTCTAAGACT GTCTACACCT GCTTGCCTTT TAGCTTATTT TAATTAATTC
  GACCAACTTT AACCAAAGGT TATAACTAAA ATTTTTTAAA AAGTAAATAA TACTGAACAG
  CTAATTTTTA TCAGAAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47734415	NES10229575	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32942942					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47734415	NES10229575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53426160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	1289 bp distal
Gm40303	predicted gene, 40303	1727 bp upstream
Rr399079	regulatory region 399079	1587 bp downstream
Rr611581	regulatory region 611581	1670 bp distal
Rr611582	regulatory region 611582	1000 bp distal
Rr611583	regulatory region 611583	235 bp distal
Smim20	small integral membrane protein 20	within coordinates
Tssr46209	transcription start site region 46209	1691 bp downstream
Tssr46210	transcription start site region 46210	1629 bp downstream