rs32942997 SNP Detail

Summary

• ID
  rs32942997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59954520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTATC AAGAATCTGA
  TATTCTGATA TTCTGTATAA TTCTTTTAAA ATGTAAATAG CACGAAAGAG GAGAACACAA
  TTGTAAAAGG GGAGGTAGAC ACCCCAAGTG ATGGATATAT AAATAGTAAC TATTCTCAAT
  TTGTTAGATC TGTGGAACCT CCCAAGAAAA GAACTATATT GTTACAAATA CACTTAAAAA
  W
  TTTTTTTAAA ACCCTCGTGC ACAAAACTAG GTGGATACTA AGTGACACAG TAAAAAGTTT
  CGATCATTTT TTAAAAAAAT AATCTTCCAC TTGTTACCAA ACATGGTTTT GCGATCCGTT
  CTGAATGCAA AATACAAAAA TAAAGTGCAC AACTTATCAC TAGCCTCTAA GTTACACGAT
  TCCGAAAAAC GAGAAAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45216492	mCV23749269	ABI	CRAMUS_MOUSE	f	SNP	T		A	A	A
ss146647245	ENSMUSSNP1393339	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32942997					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59954520 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	452 bp proximal
Gm13620	predicted gene 13620	920 bp upstream
Rr396985	regulatory region 396985	338 bp downstream
Rr396986	regulatory region 396986	within coordinates
Rr557596	regulatory region 557596	within coordinates
Rr557597	regulatory region 557597	430 bp proximal
Rr557598	regulatory region 557598	931 bp proximal
Rr557599	regulatory region 557599	1511 bp proximal
Tssr24181	transcription start site region 24181	1410 bp downstream
Tssr24182	transcription start site region 24182	1431 bp downstream
Tssr24183	transcription start site region 24183	1475 bp downstream
Tssr24184	transcription start site region 24184	1636 bp downstream