rs32943076 SNP Detail

Summary

• ID
  rs32943076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46137176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATCCTGGT AGCGGTCAGT GAACTCACCT GAGAGCAGAT
  TCCCAATAAA CCCATTTTTA ATATATTCTC ATCTGGCTCG AATTGGCTCA TTTCAGGCAA
  Y
  TGGAGCCAGA TGAGAATATA TTAAAATCCT TTCTTGGAGG ACTCTTCCAA AGTCTTACTC
  TGGATAATCT GTCCTCAATA GCAAAGGATG AGTGATAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45715950	mCV22985040	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146261755	ENSMUSSNP5900276	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321104086	CHEV_4_46150048	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32943076					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46137176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	987 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	1556 bp upstream
Rr591548	regulatory region 591548	563 bp proximal
Rr591549	regulatory region 591549	1252 bp proximal
Rr591550	regulatory region 591550	1448 bp proximal
Rr591551	regulatory region 591551	1528 bp proximal
Tssr37109	transcription start site region 37109	1308 bp upstream
Tssr37110	transcription start site region 37110	1353 bp upstream
Tssr37111	transcription start site region 37111	1401 bp upstream
Tssr37112	transcription start site region 37112	1536 bp upstream
Tssr37113	transcription start site region 37113	1645 bp upstream
Tssr41557	transcription start site region 41557	1180 bp downstream
Tssr41558	transcription start site region 41558	1222 bp downstream
Tssr41559	transcription start site region 41559	1491 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates