rs32943768 SNP Detail

Summary

• ID
  rs32943768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53425334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAGTTG AAAGGTGTTT TTATGGTGCA TCATTGCCAA
  TCCCTAAGAT GTCTTGGAGC GGAAATATTT CAAAGCTAAA CTGTTAACCT GGGTTCTGAG
  Y
  TTTTCCTCAA ATCGTTTTTT TTTTTTTTAG ATTCTGCTGG TTTCCTTCAT TTTTAAGCTG
  GCTGCTCACA TGACAATGGC GAGTGTCCGG GGAGTCATTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47734421	NES10229570	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32943768					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47734421	NES10229570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53425334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	463 bp distal
Gm40303	predicted gene, 40303	901 bp upstream
Rr399079	regulatory region 399079	761 bp downstream
Smim20	small integral membrane protein 20	within coordinates
Tssr46209	transcription start site region 46209	865 bp downstream
Tssr46210	transcription start site region 46210	803 bp downstream