rs32943770 SNP Detail

Summary

• ID
  rs32943770
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53424056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGAATC CCTGTCTACT
  TTCTGAAACC CCTGTATAAT TCCCCCCATA ACCCAGCACA CACAATATGG AGAGCAAAGA
  GGACAAGGGA TCAAAGTTAG ATCACTTACT GTGCTCAAAC ACCCTCCAGG AAAGGCTGTC
  TTGGGTCAGA AGACTCAGTG ACTAATTTTG CAAATACCTT GCAAACCATT CGAACCAGGT
  K
  ATTTGCTCCT TTGTGGCTCA TGCCCACACA CAGCTTTCAA AGAGGGAGGC CCAGTCTTTC
  AGAGGCTTCT AGCCTCACCA GTCACCAAAT GTCACATTAA TGAGGGGGAA GGGTAAGAAA
  GAGTTGTTGG GAACAGAAGA GTAAGACAGA AGGTGGTAAT TGGAGCAGAG AAGGAAGGAC
  CCAGACCCGG GGCCAGTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47734423	NES10229638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32943770					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47734423	NES10229638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53424056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	171 bp proximal
Gm40303	predicted gene, 40303	within coordinates
Rr399079	regulatory region 399079	217 bp upstream
Rr611581	regulatory region 611581	within coordinates
Rr611582	regulatory region 611582	601 bp proximal
Rr611583	regulatory region 611583	1299 bp proximal
Smim20	small integral membrane protein 20	392 bp upstream
Tssr46209	transcription start site region 46209	389 bp upstream
Tssr46210	transcription start site region 46210	416 bp upstream