rs32948585 SNP Detail

Summary

• ID
  rs32948585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75092313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGAAC TCACTTTGTA
  GACCAGGCTG GCCTTGAGCT CAGAAATCTA CCTTCCTCTG CCTCCCAAGT GCTGGGATTA
  AAGGCGTACA CCACCACTGC CTAGCTAGCT GAAGGTTCTA GCTTAAATCT TACTCAAGCA
  CTAGTCCTAG CCTTTGTAGT TTGCTTTTAC AAATTCATTT TCATCTAAGT AGAACTTCAC
  Y
  CTGCACAAGA ATAGGAGGTA GCAGCCATTC AAGCCACAGT AGTAAAGATT ATGAACTCTT
  ATCCAACTCC TTGCTGCAAA TGCTCCCATC CAGAAAAACC TAATTGAGGG TGACGGGCAG
  ACTAAAGGCA GAGGGTAGCA ATCTGCTCTC TAAAACATCC CCTGTCTCAC ATAAACATAG
  ATAAATGAAA TGAGTTAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47735858	NES11301579	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32948585					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47735858	NES11301579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75092313 () rs orientation: forward

Symbol	Name	Function Class
Myo5a	myosin VA	within coordinates
Rr683078	regulatory region 683078	629 bp distal
Tssr86144	transcription start site region 86144	835 bp downstream
Tssr86145	transcription start site region 86145	746 bp downstream
Tssr86146	transcription start site region 86146	629 bp downstream
Tssr86147	transcription start site region 86147	1007 bp upstream
Tssr86148	transcription start site region 86148	1026 bp upstream