rs32948589 SNP Detail

Summary

• ID
  rs32948589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75092429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCTTAA ATCTTACTCA
  AGCACTAGTC CTAGCCTTTG TAGTTTGCTT TTACAAATTC ATTTTCATCT AAGTAGAACT
  TCACTCTGCA CAAGAATAGG AGGTAGCAGC CATTCAAGCC ACAGTAGTAA AGATTATGAA
  CTCTTATCCA ACTCCTTGCT GCAAATGCTC CCATCCAGAA AAACCTAATT GAGGGTGACG
  R
  GCAGACTAAA GGCAGAGGGT AGCAATCTGC TCTCTAAAAC ATCCCCTGTC TCACATAAAC
  ATAGATAAAT GAAATGAGTT AAGCATTAGT GGTACTCAAA GTTAGTCCTC TGTTAGCAAA
  ATTAGTATCA CCTAGTCCCT TGTTGGAAGT GCAAAAATTT TAGGCCTAAC ACCACTAGAC
  ATCAAGTGAA AATCATATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47735862	NES11301581	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32948589					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47735862	NES11301581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75092429 () rs orientation: forward

Symbol	Name	Function Class
Myo5a	myosin VA	within coordinates
Rr683078	regulatory region 683078	745 bp distal
Tssr86144	transcription start site region 86144	951 bp downstream
Tssr86145	transcription start site region 86145	862 bp downstream
Tssr86146	transcription start site region 86146	745 bp downstream
Tssr86147	transcription start site region 86147	891 bp upstream
Tssr86148	transcription start site region 86148	910 bp upstream