rs32954398 SNP Detail

Summary

• ID
  rs32954398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCCCGG TATGGATCAT
  TGCAGGCTTG AGAGCAATGA GGTTAACTTC TGTGACTTTT CTCAGGGATG CTTGGAATTA
  AACCTTGCTG TGCAAGTTGG ACAGCCAAGT CAGGTCCCCT GGTCGCATGC CACTTGGCTT
  TCCCATTTTA AAGAAAGTTC AATATGTAGA GATAGGGATA TCTAGATAGA TATAAACACT
  W
  ATTGTCAACA TTCTCACCTT GTTTTTAAGT TGTCATTTAG TCAGTCACTT TATTCCCAAT
  TATAAATTTC TCCCAAACAA AGGAAAATAA ACAATTGTTT TACTAGTTTA GTGTAAAGGA
  AAAAGGACTA GTGGGAAGTG GGGCAGTGAA GAAAAAAACA AACCAACACA TTATAAAAAC
  TGATGCATCT TCCTCCAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45217181	mCV23728585	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss320437746	CHEV_2_102292707	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32954398					SNP	T	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	270 bp distal
Fjx1	four jointed box 1	758 bp upstream
Rr561694	regulatory region 561694	1790 bp distal
Rr561695	regulatory region 561695	1206 bp distal
Rr561696	regulatory region 561696	within coordinates
Rr561697	regulatory region 561697	893 bp proximal
Rr561698	regulatory region 561698	1020 bp proximal
Tssr25397	transcription start site region 25397	776 bp upstream
Tssr25398	transcription start site region 25398	735 bp upstream
Tssr25399	transcription start site region 25399	707 bp upstream