rs32955485 SNP Detail

Summary

• ID
  rs32955485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75190730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCCACT CACTTCGAGG
  CCTGCTAGGA GGACTAGGTG TCGAAGTGGA GCACTAGTAT TTGATCCCCT CCCTCTCTGA
  ATTGGGAGCT AGAACCTGTC AATACTCCGA ATAACAATAT TTGAGGAGGG CTTTTTACCC
  CTGCTACCCC TGAGAATATC TCTATCTGTC TTAGCTACAA AATATGAAAA ATACCTTCCT
  Y
  GAGATGAACT TGCAGAGTGA ACAGAGGTGG ATGCAGCCCC TTTAACAAGC AGAGATGCTC
  ATGGGAAACT GTCCCTGGTG GTCTTCCCAG GCTGCTTAGC CTCCCCTGCC TCTGTGACAA
  AACGCCTCCT AGCAATGTAC CTTCGCCTTC CGACCTGCAG TTTTACCCGT CTTGCCCTCT
  GCCTGTCTCA TGGCAAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47736510	NES11310184	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32955485					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47736510	NES11310184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75190730 () rs orientation: forward

Symbol	Name	Function Class
Myo5c	myosin VC	within coordinates
Rr197405	regulatory region 197405	130 bp distal
Rr197406	regulatory region 197406	1871 bp proximal
Rr204946	regulatory region 204946	1423 bp distal
Rr204947	regulatory region 204947	1988 bp proximal
Rr212262	regulatory region 212262	862 bp distal
Rr212263	regulatory region 212263	102 bp distal