rs32956338 SNP Detail

Summary

• ID
  rs32956338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:75293249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATTAA AAACCAAAAC
  TGTGTGTCTG TGTGTACTCT TGTGAATGCC TGAGGGTATG TATGCTATGC AGTACAGGCA
  CCTCTGAAGG TCTGAAGTAG TTGCAGATGG TTGTGAACCG CCCGATGGGT CCTCTGCAAT
  AGCAGCGAGG ACTCCTACAT CCTGAGCTAC CTCTCTAGCT GACAGTTTCT ATCTCACCAC
  R
  CCTTGCATCA CAAAACTCAT TTTTAAATAT ATGTACTTCA CATGGCACTT GCCTAATATG
  CTCAGACCCT GGATTAAATC CTCGGTATCA CCTAAAATAG GCATGGGGTC TCATGGCTGT
  AACCCTAACA CTTGTGGGGC AGAGACAGAG GGATCAGGTC AAGGCCGGGC CAGGCCAGCT
  GAGCCTACTT GAGGCCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47737248	NES11306037	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32956338					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737248	NES11306037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75293249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67678	predicted gene, 67678			177 bp downstream
Mapk6	mitogen-activated protein kinase 6			Intron
				Noncoding-Transcript-Variant
Rr683126	regulatory region 683126			1980 bp distal
Rr683127	regulatory region 683127			946 bp distal
Tssr90534	transcription start site region 90534			1259 bp downstream
Tssr90535	transcription start site region 90535			1501 bp downstream
Tssr90536	transcription start site region 90536			1920 bp downstream
Tssr90537	transcription start site region 90537			1992 bp downstream