rs32956340 SNP Detail

Summary

• ID
  rs32956340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:75293619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCAGC TGAGCCTACT
  TGAGGCCCTG TCTGATGAAC AAAACGAACA AGAATACTCA GCCCAGATCC CCACAAAGCG
  TGTTTTATAT AGTTCCACAG TAGTTATCTG TCCTCCTCCT TAGACGGCTT TAAAATGTCT
  AATCTTTAAT GAAAGTCCAG CTACTCCTGA TGCTAAGTTG ACATTATTAA ATGATTTCAG
  R
  AGCAAGTTTC CCAGGAAGAA AGAAACCCTT GGCTTCCCTC CATGTTTTTT TTTTTTTTTT
  TTTTTTTACA GCTGTGCTCA TGGAGGCCAG GTTGGCCTTC CACTCCTGAT CCCCCTGCCA
  CCTGTTGAAT GCTGGGCCAG GCCCAGCCTC CAGGTGATCT ACTGAGGAAG AGATAGAGGT
  TTCTCTGCAA GTTTCAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47737250	NES11306009	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32956340					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737250	NES11306009	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75293619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67678	predicted gene, 67678			547 bp downstream
Mapk6	mitogen-activated protein kinase 6			Intron
				Noncoding-Transcript-Variant
Rr683127	regulatory region 683127			1316 bp distal
Tssr90534	transcription start site region 90534			889 bp downstream
Tssr90535	transcription start site region 90535			1131 bp downstream
Tssr90536	transcription start site region 90536			1550 bp downstream
Tssr90537	transcription start site region 90537			1622 bp downstream
Tssr90538	transcription start site region 90538			1653 bp downstream