rs32957886 SNP Detail

Summary

• ID
  rs32957886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75296231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCGGATT TTTCTTTACT
  TTGCTCTTTC CAGTTGGAAA GATCTATAAT AAGCTTGGGC TCATAGTAAT GGTTAACCTC
  GCTCTCCCTC CACACCAGGT TATCTAAGTA TGGTGATGAT CTTGTTTTGT AGTTACAGGT
  GTGGCTACAC TCCAGATCGC AGTACTTGTT CTCGTGGTGA TCTGGGTACT GCCAGCAGGG
  Y
  TCAGCAGAGT AGCTGGTGTC GAAGGCGGGA TCCTCTAGAT ACTTCTCTCG GTCTCCATCC
  AAGTATTTTC GAGGATCAAC TTGGACTTCT TCTTCATCGG TGACGTCAGA CAGAGCTCTT
  GGGTCAAGCT GCACCTCATC GATATCAAAG TTGTTATGAA TAGGCCAGTC ATGCTCCGAG
  AACTGACAAT CGTGGTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47737268	NES11306021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32957886					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737268	NES11306021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75296231 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90534	transcription start site region 90534	1702 bp upstream
Tssr90535	transcription start site region 90535	1460 bp upstream
Tssr90536	transcription start site region 90536	1051 bp upstream
Tssr90537	transcription start site region 90537	976 bp upstream
Tssr90538	transcription start site region 90538	948 bp upstream