rs32957889 SNP Detail

Summary

• ID
  rs32957889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:75296750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagacccac cacacccagc tctgagtgag
  tgctTTTAAG GAAAAGTACT ATTCAGGGAG AACTGTATCA AGGGACAGGA AATGGGGTGA
  GCAAACAGAA GGGGCATGCC GTGCAGGTGA GACGGCGGAC CTTCCCTGAG AGCGGGAGCA
  Y
  AGGCAGCTGC CATGGTAGAG CCCCTTTCTT TCCAAACCAG AGACGTGAGA TCTGAAATCT
  CATGTGTGAT CCCCAATCCT GCCTACAATC AAACCCCCTG AAGACTCTGA CCCTGGCAGA
  CTGTTATGAG GCACCCCCAA AATTCAGAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47737272	NES11305964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	T	C		C
ss323008203	CHEV_9_75237275	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32957889					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737272	NES11305964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75296750 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	Intron
Tssr90535	transcription start site region 90535	1979 bp upstream
Tssr90536	transcription start site region 90536	1570 bp upstream
Tssr90537	transcription start site region 90537	1495 bp upstream
Tssr90538	transcription start site region 90538	1467 bp upstream