rs32958746 SNP Detail

Summary

• ID
  rs32958746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75297048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGACTC TGACCCTGGC
  AGACTGTTAT GAGGCACCCC CAAAATTCAG AAACACCAAA AGGAGGCTGC AGAGAGCATC
  ATTTTAGTGG GCACCACCCA GTGAATTCAC AGTACGAGGA CCACACAAGG CCTTTAACGG
  AACCCATCCT GAGCTTTTAT AGTATTGGAA AAACAGTTAC TTTTAGGTCA TTTGGAAAAC
  R
  AATTAAATTG TCACATGTAC AAGGAATCAA AATGTCTACT CATTGAGATA CCTAGATCCA
  GGAAACAAAG GGCTTGTTTA TTACAAAGCC CTGGGTTTTA TCCTCATGAT GAAAAAGACT
  AGGTATATAA TTTAAACAAT TTTTAAAAAC TTTGAATGAC TTTATAACAT CAGTAGTTTA
  AAATCAGATT TCAAGATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47737280	NES11305968	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	A	A	A			A	G		A
ss136640772	ENSMUSSNP5116858	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
ss323008205	CHEV_9_75237573	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32958746					SNP	A	A	A	A	A	G	A	G	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737280	NES11305968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75297048 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90536	transcription start site region 90536	1868 bp upstream
Tssr90537	transcription start site region 90537	1793 bp upstream
Tssr90538	transcription start site region 90538	1765 bp upstream