rs32959728 SNP Detail

Summary

• ID
  rs32959728
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84444849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAAACAA AAGGTCACTT CACCTTGGGA CCAACCTTTG
  TGAGAAGTGG CTAGGTGGGC CTAACTGGAT TTGGTAAGTG GAATTTACTG GATAAGATTT
  S
  TTGGTCAGTC AAGACTGCCC CTGAGAATGG CATAAATATT TTTGAGATGG GGGAATGTAG
  GTAGCCCTTG GGGTGAATCA CAAAGCTTTG CTGTAGACC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss46215526	mCV23003965	ABI	CRAMUS_MOUSE	f	SNP		G	G			C	G
ss51971791	NES14985268	PERLEGEN	MM_PANEL2	f	SNP	G			G	G			C		G	G		G
ss145360702	ENSMUSSNP5899471	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss322745610	CHEV_8_86242119	CHEVERUD	SCREENING_POP	f	SNP									G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs32959728					SNP	G	G	G	G	G	C	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971791	NES14985268	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84444849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666293	regulatory region 666293			1897 bp distal
Rr666294	regulatory region 666294			1099 bp distal