rs32961453 SNP Detail

Summary

• ID
  rs32961453
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43520054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTTAAC TTATTTCCCC
  CATGTAAATA GTCTTCTACC CAGGTAAAAA CCTGCGTTCC CCACAAGCTC CATTCTCCTG
  ACGTGGTGCC TCTTCCAGCA CTATGCGGGG TTTGCGATTA AGTGAATGGT CCCGGTAACT
  CCCCTGAGAG CACCTAAGTC TGAGGCAGCT CTGATTCCTA CAAAGCAGAG CCTAGCTCAG
  K
  TAAAAGGCAG AACAGGCAAG AACCAAGACT TTGCCGCTGC CAAAAATCAG CCAATCACAG
  AATCAAGTTC TGTGACATCA CCAGCTGCTA GGCAGACTTC CCAGCCAGGG ACTTCAGGGG
  CCAGCCAGGC CTGTAAGGAA TCGTGGCTAT AGCAAAGGGC TCCCTGCCAA GGTGACAGTG
  GAGTGGGGGA AGGGATAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45718819	mCV23402351	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146240507	ENSMUSSNP2994558	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32961453					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43520054 () rs orientation: forward

Symbol	Name	Function Class
Rr398232	regulatory region 398232	within coordinates
Tpm2	tropomyosin 2, beta	within coordinates
Tssr36976	transcription start site region 36976	1613 bp downstream
Tssr36977	transcription start site region 36977	797 bp downstream
Tssr36978	transcription start site region 36978	580 bp downstream
Tssr41432	transcription start site region 41432	1599 bp upstream
Tssr41433	transcription start site region 41433	1581 bp upstream
Tssr41434	transcription start site region 41434	1350 bp upstream
Tssr41435	transcription start site region 41435	755 bp upstream
Tssr41436	transcription start site region 41436	336 bp upstream
Tssr41437	transcription start site region 41437	within coordinates