rs32961565 SNP Detail

Summary

• ID
  rs32961565
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69542683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGGCTGAAG CTTTCGGTTG TATAGAATCA AACCTCTTCA CGGCTCCCTT AAAGCCAGGC
  AGAGAGCTTT GAAAGAAGAC TTTTTTTTCC CTCTTTTTTA AGTATCTGTT GTTTTCCTGA
  AAATAAGGTT CCATTTGCAC AGGTTAATTG GCAGCTTGGC TCTGTGGGTG GCTCATTGGT
  TAAAAGCGTT TCAGCTGAAG GGTTTTAGCT AGGCGCCCTC CAGCCTGACT AATCCTGTCC
  TGAGCTGTCA GTGGGTCATG TGATAACACT GCAGCGAGGG GAAGGGAAAA AAAAAAAAAA
  M
  AAACACACAC ATTGGAGAGT GGATTGCTGA GGTGTGCCTT TTAAGCATTT TTTTAGAATA
  ATTGTTAAAA TTAGAGAATG CCTGTTAGGG GTTCATGTGA GCCCAAGGAA ACGTCGGGAA
  AACTGACAGA TTTATACCTG AGAATTACAG AATCTCTAGA ATTGCATTTG ATATGTATGC
  TTTGCTCTGA GCAGAGCACA TAGACACTGG TGTGGCTTCT AAGGGAAAAA TGTTACAAGG
  TTATAGTAGT CTCTTTCCAT ATAACAAGTC ATTCAGAGCC AATTCAGGGA GTGTCGACTA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46215644	mCV22776477	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32961565					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69542683 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	617 bp distal
Rr400869	regulatory region 400869	1244 bp downstream
Rr664484	regulatory region 664484	1375 bp distal
Rr664485	regulatory region 664485	319 bp distal
Rr664486	regulatory region 664486	820 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	796 bp upstream
Tssr77656	transcription start site region 77656	1304 bp downstream
Tssr77657	transcription start site region 77657	1287 bp downstream
Tssr77658	transcription start site region 77658	1235 bp downstream
Tssr81518	transcription start site region 81518	816 bp upstream