rs32961658 SNP Detail

Summary

• ID
  rs32961658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164901995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT GCATGCGTGC TTGAGTACCA
  M
  AGCGTGTGTG TGGTCAGAGG ACAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45218707	mCV23187124	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss148234557	ENSMUSSNP1985769	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss320607380	CHEV_2_164885575	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32961658					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164901995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569804	regulatory region 569804			1 bp proximal
Rr569805	regulatory region 569805			1635 bp proximal
Tssr21703	transcription start site region 21703			1805 bp downstream
Tssr21704	transcription start site region 21704			771 bp downstream
Tssr21705	transcription start site region 21705			144 bp downstream