rs32965576 SNP Detail

Summary

• ID
  rs32965576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148888410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA AAACTCCCCT TTGCAGAGAG
  Y
  AAGAGCAAAG AAAATATCAA ACAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45718862	mCV24952142	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148019810	ENSMUSSNP1062592	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C		T
ss321423035	CHEV_4_148178062	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32965576					SNP	C	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148888410 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	476 bp upstream
Cpgi15311	CpG island 15311	within coordinates
Rr100549	regulatory region 100549	within coordinates
Rr407230	regulatory region 407230	within coordinates
Tssr1379	transcription start site region 1379	377 bp upstream
Tssr40301	transcription start site region 40301	397 bp upstream
Tssr40302	transcription start site region 40302	467 bp upstream
Tssr40303	transcription start site region 40303	497 bp upstream