rs32967250 SNP Detail

Summary

• ID
  rs32967250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101047457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAAGCT TACATCTAGT
  TAAATCTCAC AATTACATTG GGTCTTAGAG GCAGTTCAGT GGTAGAGCAC TGCCTAGCAT
  GCTCAAGTCC CTGTGTGGAT TCCATTCCCA GTTAGCCCAT CCTCACAATA AGCTTAACCC
  TGAAACCCAC ACTTCCACTT TACTGTAAGG AAAGTTTCCA CATGTACAAA CATGCAGAGG
  Y
  GATTACGTGA CTGTCACAAA CACATTTAAC TTGTATATTA GCAGCCAAAT AAGAACCCAG
  CTCTGAAAAT ATACCTGTTG TAATCAGAAA AAAATTTTCA GACCAAGTCT TACTATGTAA
  CTGCAGCTGA TCTAGGACTC TATGTAGACC CAGGCTGGCC TCCAAGTCAC CAGAAACTGC
  CTGCCTTTCA TGTTAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47239331	NES11408780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32967250					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239331	NES11408780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101047457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	1237 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	1253 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1057 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	1014 bp upstream
Tssr114723	transcription start site region 114723	1741 bp upstream