rs32967959 SNP Detail

Summary

• ID
  rs32967959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101048088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAACTGC AAATTAATGC
  AACAAGGTAA CTATACTTCT GCTCCAAAAA CAATTTGAAG TTTTGGCCAA TATGTATTTT
  CTTCCAAGAG TGAAATTCAG AGAATGCAAA CCCTTAAGAA AGGAATATTT TAAAACGTGA
  AACCGTTATT TCAAACAACC TTATCTTTGA ACACTGAAGA CTGTTTCAAT AGACTTGAGG
  Y
  GAAAGCAGAA GGACTTGTTC AAGTGTTAAA AGATACCTCT CCCCACCAGC CAACTCAACC
  AACTAAGGAC CATACGCTTA AACAATCAGA AAAGCTTGCA ATAAAATGTT CCAAAGGTTC
  ACGAGTTCCC ACAGAAGACC TACAAAGTCT TTCTTTCTTA GCCAGGTGTG GCAGCACTTT
  AATCCCAGCA CTGGAGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47239343	NES11408765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32967959					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239343	NES11408765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101048088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	606 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	622 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1688 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	383 bp upstream
Tssr114723	transcription start site region 114723	1110 bp upstream
Tssr114724	transcription start site region 114724	1883 bp upstream
Tssr114725	transcription start site region 114725	1927 bp upstream
Tssr114726	transcription start site region 114726	1977 bp upstream
Tssr117352	transcription start site region 117352	1620 bp downstream
Tssr117353	transcription start site region 117353	1746 bp downstream
Tssr117354	transcription start site region 117354	1824 bp downstream