rs32968061 SNP Detail

Summary

• ID
  rs32968061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188918889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCAGGGA AAAAATACCA
  TGATGGCTCG TCCTACATCC AGAGAACCTG AATGCCCAGC CCTGAGGAAT TCCCCAAAGT
  GCCCAACTGT ACACAGTGCC GCCAGGCACA GAGCAATTGA AAGTGTCTAG CACCTCCTTT
  CCCCAGGTTC ATACTAGTCT CTTGGTTGGA CTCTAATGCA AATGTAGATA TGAGCAGTAG
  R
  TTGAGTGCAG GGTAAGTCTG AAGTAGCAGG GCTCAGCATG AAGAAGCCTC TGCAGATCTT
  TGGTGGCATC CACCATAGAA AGTGTCAAAA TGGACCTCAG CCTAGAACCA CGGAGAGGCC
  TTAAACAGAT CTGAGCTGCT GATGCCACAC CACGTGTGGG ACTGTGATGT TAAAAGTCTA
  CGGTTCAGAT AAATTAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45139775	mCV23589182	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss46754743	NES10650448	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	G	G	G	A
ss146484412	ENSMUSSNP1912570	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968061					SNP	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46754743	NES10650448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188918889 () rs orientation: forward

Symbol	Name	Function Class
Rr1101	regulatory region 1101	582 bp upstream
Rr425767	regulatory region 425767	900 bp distal
Rr425768	regulatory region 425768	872 bp proximal
Rr425769	regulatory region 425769	1067 bp proximal