rs32968083 SNP Detail

Summary

• ID
  rs32968083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCTGTA GATTTTAACT
  TGACTGGAAC TTTGGTTTCT CCAACTAATA TAGGTGAGAC ATTGTAGACT GGAATCAGAC
  ATGTAAAAGA TTGCAAATAG GTTTGGTTCT AAATTTTGGA GTGCGCGTGT CTGTGTGTGT
  TATTTAGTAA ACCATACTTA ACTCATGTAA ATTGTATAGT TATGCTTTCA ACAAGGTATT
  Y
  AGATCTTTGT GTAGTCCCAT TTTCTCAACT AATAAAATTA GACAATAGAC TAGTTGGTTT
  CTAAAGTTTT TCAACACTCT AATTTCTGCT GTTTTAAGTG AAAAATGTAT AAAGGTCTAC
  TTACTTAGGT TTTCTGATAG CTTGTTTTAT ACTTTAGTTA TTCAATGTTT TATGAAAATA
  ATTCCATTCA GAAAAATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238885	NES11096976	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968083					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238885	NES11096976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056377 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	371 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr33452	regulatory region 33452	1778 bp distal
Tssr6335	transcription start site region 6335	552 bp upstream
Tssr6336	transcription start site region 6336	569 bp upstream
Tssr6337	transcription start site region 6337	750 bp upstream
Tssr6338	transcription start site region 6338	771 bp upstream
Tssr6339	transcription start site region 6339	1683 bp upstream
Tssr6340	transcription start site region 6340	1731 bp upstream
Tssr6341	transcription start site region 6341	1772 bp upstream
Tssr6342	transcription start site region 6342	1802 bp upstream
Tssr6343	transcription start site region 6343	1819 bp upstream
Tssr6344	transcription start site region 6344	1853 bp upstream
Tssr6345	transcription start site region 6345	1872 bp upstream
Tssr6346	transcription start site region 6346	1935 bp upstream
Tssr6347	transcription start site region 6347	1965 bp upstream