rs32968144 SNP Detail

Summary

• ID
  rs32968144
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38058808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAAGGT TGGTCATGGC
  CACAGAAGGC TCTGGTTCAT GTTTGGTCTA AGTTGTGGTC ATACTATCTT GTGACTAGTC
  CTCATACACA TGTGTGTGTG TGTGGGGGGG GGGTCCATCT CTTTGTGTGC AGAGGAGGCT
  GGAGGTCGAT TCCGCTGTCA CTTTCCATGA TCTGTTTTTA ATATTACACC ATTTCTCTAC
  K
  GTCTTTCTGT ATACCTCTCT TTTAAATTTA TGGCCTTGTT TTTTTCCCAT GAACTGCTGT
  GAGGTTGAGT CCCCCGGAGT GTCAGAAACT GTATGTATAA AGCCTCACCC AAATGGCTTT
  CTGAACAGCA GTTGAATAGA GACACCAACA GATAGATACA GTAAAGCCAG TGCCTCAGCT
  CTCTGTAGAG AACCACAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238939	NES11096821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968144					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238939	NES11096821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38058808 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Tssr6335	transcription start site region 6335	1865 bp downstream
Tssr6336	transcription start site region 6336	1850 bp downstream
Tssr6337	transcription start site region 6337	1667 bp downstream
Tssr6338	transcription start site region 6338	1643 bp downstream
Tssr6339	transcription start site region 6339	704 bp downstream
Tssr6340	transcription start site region 6340	678 bp downstream
Tssr6341	transcription start site region 6341	646 bp downstream
Tssr6342	transcription start site region 6342	618 bp downstream
Tssr6343	transcription start site region 6343	600 bp downstream
Tssr6344	transcription start site region 6344	564 bp downstream
Tssr6345	transcription start site region 6345	535 bp downstream
Tssr6346	transcription start site region 6346	484 bp downstream
Tssr6347	transcription start site region 6347	447 bp downstream
Tssr6348	transcription start site region 6348	307 bp downstream
Tssr6349	transcription start site region 6349	245 bp downstream
Tssr6350	transcription start site region 6350	1940 bp upstream
Tssr6351	transcription start site region 6351	1977 bp upstream