rs32968146 SNP Detail

Summary

• ID
  rs32968146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38059673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGTGGC CAAAGAGATT
  TCCTTCTCAA AATTCATGTC AGATGTTAAC TAAAATTTTC CCTTTCTATA AAAAAAAAAA
  AACAAAAAAA CAGCTTAACC TTTGAAATAT AAAAGGAAAA GTAAATTAAG AGACTTAAAT
  TAGTTACACT TAGATGACAG GGAGCATGTT TTTGTTTCAT TTACTGGTTT GTCTGTGTGG
  R
  CATATTGTGC CCATCATATG GGGAGGGAGA GGTCAGAGGA CAGCCTTTAG GAATCAGCTC
  TCAGGACCAC TCAGCTTCAG GAATCAAACA TGGGCTACCC ACTTGGTAGC TTTTCCCCTT
  TATCTGCTAA GTCTTGTTAC TGACCTCGTT TGTCTTTTTT GGTAATTGAA GTAAATTGAT
  CAGTAATTGA AATATAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238942	NES11096768	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968146					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238942	NES11096768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38059673 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	273 bp distal
Tssr6339	transcription start site region 6339	1569 bp downstream
Tssr6340	transcription start site region 6340	1543 bp downstream
Tssr6341	transcription start site region 6341	1511 bp downstream
Tssr6342	transcription start site region 6342	1483 bp downstream
Tssr6343	transcription start site region 6343	1465 bp downstream
Tssr6344	transcription start site region 6344	1429 bp downstream
Tssr6345	transcription start site region 6345	1400 bp downstream
Tssr6346	transcription start site region 6346	1349 bp downstream
Tssr6347	transcription start site region 6347	1312 bp downstream
Tssr6348	transcription start site region 6348	1172 bp downstream
Tssr6349	transcription start site region 6349	1110 bp downstream
Tssr6350	transcription start site region 6350	1075 bp upstream
Tssr6351	transcription start site region 6351	1112 bp upstream
Tssr6352	transcription start site region 6352	1138 bp upstream
Tssr6353	transcription start site region 6353	1161 bp upstream
Tssr6354	transcription start site region 6354	1642 bp upstream
Tssr6355	transcription start site region 6355	1681 bp upstream
Tssr11327	transcription start site region 11327	1595 bp downstream