rs32968149 SNP Detail

Summary

• ID
  rs32968149
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38059738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAAAAAA AAAAAAACAA
  AAAAACAGCT TAACCTTTGA AATATAAAAG GAAAAGTAAA TTAAGAGACT TAAATTAGTT
  ACACTTAGAT GACAGGGAGC ATGTTTTTGT TTCATTTACT GGTTTGTCTG TGTGGACATA
  TTGTGCCCAT CATATGGGGA GGGAGAGGTC AGAGGACAGC CTTTAGGAAT CAGCTCTCAG
  K
  ACCACTCAGC TTCAGGAATC AAACATGGGC TACCCACTTG GTAGCTTTTC CCCTTTATCT
  GCTAAGTCTT GTTACTGACC TCGTTTGTCT TTTTTGGTAA TTGAAGTAAA TTGATCAGTA
  ATTGAAATAT AAATATTCTA CCTGATTGCT TTCTTTTTTT GTTTGTTTTT TTAATTTTTT
  TTTCGAGGCA GGGTCTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238945	NES11096769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968149					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238945	NES11096769	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38059738 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	338 bp distal
Tssr6339	transcription start site region 6339	1634 bp downstream
Tssr6340	transcription start site region 6340	1608 bp downstream
Tssr6341	transcription start site region 6341	1576 bp downstream
Tssr6342	transcription start site region 6342	1548 bp downstream
Tssr6343	transcription start site region 6343	1530 bp downstream
Tssr6344	transcription start site region 6344	1494 bp downstream
Tssr6345	transcription start site region 6345	1465 bp downstream
Tssr6346	transcription start site region 6346	1414 bp downstream
Tssr6347	transcription start site region 6347	1377 bp downstream
Tssr6348	transcription start site region 6348	1237 bp downstream
Tssr6349	transcription start site region 6349	1175 bp downstream
Tssr6350	transcription start site region 6350	1010 bp upstream
Tssr6351	transcription start site region 6351	1047 bp upstream
Tssr6352	transcription start site region 6352	1073 bp upstream
Tssr6353	transcription start site region 6353	1096 bp upstream
Tssr6354	transcription start site region 6354	1577 bp upstream
Tssr6355	transcription start site region 6355	1616 bp upstream
Tssr11327	transcription start site region 11327	1530 bp downstream