rs32968685 SNP Detail

Summary

• ID
  rs32968685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT TTAGTTATTC AATGTTTTAT
  R
  AAAATAATTC CATTCAGAAA AATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47238888	NES11096977	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32968685					SNP	G	G	G	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238888	NES11096977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056551 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	545 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr33452	regulatory region 33452	1952 bp distal
Tssr6335	transcription start site region 6335	378 bp upstream
Tssr6336	transcription start site region 6336	395 bp upstream
Tssr6337	transcription start site region 6337	576 bp upstream
Tssr6338	transcription start site region 6338	597 bp upstream
Tssr6339	transcription start site region 6339	1509 bp upstream
Tssr6340	transcription start site region 6340	1557 bp upstream
Tssr6341	transcription start site region 6341	1598 bp upstream
Tssr6342	transcription start site region 6342	1628 bp upstream
Tssr6343	transcription start site region 6343	1645 bp upstream
Tssr6344	transcription start site region 6344	1679 bp upstream
Tssr6345	transcription start site region 6345	1698 bp upstream
Tssr6346	transcription start site region 6346	1761 bp upstream
Tssr6347	transcription start site region 6347	1791 bp upstream
Tssr6348	transcription start site region 6348	1939 bp upstream
Tssr6349	transcription start site region 6349	1978 bp upstream