rs32968690 SNP Detail

Summary

• ID
  rs32968690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATAGAC TAGTTGGTTT
  CTAAAGTTTT TCAACACTCT AATTTCTGCT GTTTTAAGTG AAAAATGTAT AAAGGTCTAC
  TTACTTAGGT TTTCTGATAG CTTGTTTTAT ACTTTAGTTA TTCAATGTTT TATGAAAATA
  ATTCCATTCA GAAAAATGCT CATGTGCATA TGCACAGATG TTCATTACTT GCAGAAGTTA
  Y
  TTTTTTCCCT TCCCTGCCTA GGCTGTTTGC TTGTCTGTTT TAGGGGTAGG GCTCTTGATT
  CATACCTTCT GGTTTTGGCA TAGTGATCTT TATGGAAGAA GACAGACAGT TTGGTAGGTA
  GGTACTGTGC TATTATGAGA GAACTTGATA TTGTTTCTCT GTGTTGCTAA TATGTGAAAG
  GGTGTAAAAT AGCAAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238894	NES11096979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32968690					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238894	NES11096979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056618 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	612 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Tssr6335	transcription start site region 6335	311 bp upstream
Tssr6336	transcription start site region 6336	328 bp upstream
Tssr6337	transcription start site region 6337	509 bp upstream
Tssr6338	transcription start site region 6338	530 bp upstream
Tssr6339	transcription start site region 6339	1442 bp upstream
Tssr6340	transcription start site region 6340	1490 bp upstream
Tssr6341	transcription start site region 6341	1531 bp upstream
Tssr6342	transcription start site region 6342	1561 bp upstream
Tssr6343	transcription start site region 6343	1578 bp upstream
Tssr6344	transcription start site region 6344	1612 bp upstream
Tssr6345	transcription start site region 6345	1631 bp upstream
Tssr6346	transcription start site region 6346	1694 bp upstream
Tssr6347	transcription start site region 6347	1724 bp upstream
Tssr6348	transcription start site region 6348	1872 bp upstream
Tssr6349	transcription start site region 6349	1911 bp upstream