rs32969636 SNP Detail

Summary

• ID
  rs32969636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38057041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCTTGT TGTTGAGTAA
  CATTTTGTTC TTTGTTTTCA TTTAAGTACC AAGGATGATA CTGATTTGGG CGCCTTGGCT
  GCAGAAATAG AAGGAGCTGG TGCTGCCAAG GAGCAGGAGC CTCAGAAGTC AAAGGGAAAG
  AAGAAAAAGG AGAAAAAGAA ACAAGACTTT GAGTATGTTT TTAAAAGCAT TTAGATTTTC
  R
  TAGCTTGAGC ATTGCAGCCA TCTAATGCTT CCAGTGCTTC AAATCCCATG TACTTCTTTT
  CTAGTGAGAA CGACATTCTG AGAGAGCTGG AGGAGTTGTC TCTGGAAGCC CAAGGCATCA
  GAGCTGACAG AGACGCCGCT GCAGTCAAGG TGAGAGAGAA CAGCATCCTT CCTGTCTCCG
  CTGTCTTCTT GGCCATGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238900	NES11096981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32969636					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238900	NES11096981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38057041 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	1035 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Tssr6335	transcription start site region 6335	98 bp downstream
Tssr6336	transcription start site region 6336	83 bp downstream
Tssr6337	transcription start site region 6337	86 bp upstream
Tssr6338	transcription start site region 6338	107 bp upstream
Tssr6339	transcription start site region 6339	1019 bp upstream
Tssr6340	transcription start site region 6340	1067 bp upstream
Tssr6341	transcription start site region 6341	1108 bp upstream
Tssr6342	transcription start site region 6342	1138 bp upstream
Tssr6343	transcription start site region 6343	1155 bp upstream
Tssr6344	transcription start site region 6344	1189 bp upstream
Tssr6345	transcription start site region 6345	1208 bp upstream
Tssr6346	transcription start site region 6346	1271 bp upstream
Tssr6347	transcription start site region 6347	1301 bp upstream
Tssr6348	transcription start site region 6348	1449 bp upstream
Tssr6349	transcription start site region 6349	1488 bp upstream