rs32969638 SNP Detail

Summary

• ID
  rs32969638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38057241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTTGAG CATTGCAGCC
  ATCTAATGCT TCCAGTGCTT CAAATCCCAT GTACTTCTTT TCTAGTGAGA ACGACATTCT
  GAGAGAGCTG GAGGAGTTGT CTCTGGAAGC CCAAGGCATC AGAGCTGACA GAGACGCCGC
  TGCAGTCAAG GTGAGAGAGA ACAGCATCCT TCCTGTCTCC GCTGTCTTCT TGGCCATGTT
  Y
  TGGGAGTTGC CTGGTTTGGA AATGTGTGGT TGTAGATATA TAAATAGTTT CTATAATACT
  AGTCAAAGGG AGGAACTAAA TTTTCAGGGG GAAAAAAAAG CAGTATTGTT TTAAACCTCC
  AATTGATAGA AATACACTTT ATAGGAATCT AGGGATACTC AATGTATTGC CTGTTGATAA
  ACTTGATCCA CTTGGGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238903	NES11096982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32969638					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238903	NES11096982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38057241 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	1235 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	1960 bp proximal
Tssr6335	transcription start site region 6335	298 bp downstream
Tssr6336	transcription start site region 6336	283 bp downstream
Tssr6337	transcription start site region 6337	100 bp downstream
Tssr6338	transcription start site region 6338	76 bp downstream
Tssr6339	transcription start site region 6339	819 bp upstream
Tssr6340	transcription start site region 6340	867 bp upstream
Tssr6341	transcription start site region 6341	908 bp upstream
Tssr6342	transcription start site region 6342	938 bp upstream
Tssr6343	transcription start site region 6343	955 bp upstream
Tssr6344	transcription start site region 6344	989 bp upstream
Tssr6345	transcription start site region 6345	1008 bp upstream
Tssr6346	transcription start site region 6346	1071 bp upstream
Tssr6347	transcription start site region 6347	1101 bp upstream
Tssr6348	transcription start site region 6348	1249 bp upstream
Tssr6349	transcription start site region 6349	1288 bp upstream