rs32969641 SNP Detail

Summary

• ID
  rs32969641
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38057367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGACG CCGCTGCAGT
  CAAGGTGAGA GAGAACAGCA TCCTTCCTGT CTCCGCTGTC TTCTTGGCCA TGTTCTGGGA
  GTTGCCTGGT TTGGAAATGT GTGGTTGTAG ATATATAAAT AGTTTCTATA ATACTAGTCA
  AAGGGAGGAA CTAAATTTTC AGGGGGAAAA AAAAGCAGTA TTGTTTTAAA CCTCCAATTG
  M
  TAGAAATACA CTTTATAGGA ATCTAGGGAT ACTCAATGTA TTGCCTGTTG ATAAACTTGA
  TCCACTTGGG GTCAGTAATG GCGTCTCCAC CTTCAGTTGT CTGTGTACTT TTCATTATTG
  TTTAGGGCAC CTGGATTGTG AAGTGTGTGG TGAGTGTGAG GCATATTCTT TTGTGTGGTT
  GGATTTGTTC CTATTTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238906	NES11096986	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32969641					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238906	NES11096986	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38057367 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	1361 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	1834 bp proximal
Tssr6335	transcription start site region 6335	424 bp downstream
Tssr6336	transcription start site region 6336	409 bp downstream
Tssr6337	transcription start site region 6337	226 bp downstream
Tssr6338	transcription start site region 6338	202 bp downstream
Tssr6339	transcription start site region 6339	693 bp upstream
Tssr6340	transcription start site region 6340	741 bp upstream
Tssr6341	transcription start site region 6341	782 bp upstream
Tssr6342	transcription start site region 6342	812 bp upstream
Tssr6343	transcription start site region 6343	829 bp upstream
Tssr6344	transcription start site region 6344	863 bp upstream
Tssr6345	transcription start site region 6345	882 bp upstream
Tssr6346	transcription start site region 6346	945 bp upstream
Tssr6347	transcription start site region 6347	975 bp upstream
Tssr6348	transcription start site region 6348	1123 bp upstream
Tssr6349	transcription start site region 6349	1162 bp upstream