rs32970047 SNP Detail

Summary

• ID
  rs32970047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100983433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGAAGC AGCCCACAGC
  TGAGAAGTCC ACAGGCTGAG TGTGGGCTGG CTCAGTCCCT ACTGATTCTG CTCTCTGCTG
  ACCACTCCTC TCCTTTGGCT TGTTGTACCT TGGGGGTTCC CTGTCTTGGG GTTCACATTG
  GGGGTCCTGC TTATTCCTCC CACACCTGTC CTGGGCTTAC TGCCACCTGG ATGGCTACTC
  Y
  ACCTACAAAG CTGGCATGTG ACTGTGGAGT CACCCACAGC ATCTCATGTC TCCCAGCAGG
  ACTGCCCTGT GGACCCCAGA CCACATGCCA GACGCATCCC AAAACCATGT TGGCCTGATC
  TCCACACCAG CCCCTCACCA CACACAACCA CAGACTCCAG GGGTGGCTGC CAATCAGAGA
  CCCTCACTTC TCCTCACGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47238710	NES11410612	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32970047					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238710	NES11410612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100983433 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88c	coiled-coil domain containing 88C	within coordinates
Rr369588	regulatory region 369588	within coordinates
Rr471395	regulatory region 471395	530 bp distal
Rr471396	regulatory region 471396	587 bp proximal
Tssr117343	transcription start site region 117343	1026 bp upstream