rs32972164 SNP Detail

Summary

• ID
  rs32972164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101044737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTCAAG TCAGGTGGTG
  GTGCACATCT TTAGTCCCAA TATCCAGGAG GTAGATGCAG GTGGATGTCA GAGTTTAAGG
  ACAGCTTTGT GTTTCAAAAT TTAATATGTA GCCCTAGTAC TTTGATTATA CATTATGTAC
  TTCCAGACTG CTAAATTTTC AAATAATAAT CTGAATAACT CAGATTCATG GAGAAAAGGA
  K
  GAAAATATTA CCATACTCAA TGTCTTTGAA AGACTTTTTT TCCAGGGGGC AGGGGAAACA
  ATTACTAGAG GTCAAACCCA CTCACAATAA CTTTTTAAGT TTCCTTTTCT TCTCTTTTGA
  GAAAGGGTCT TTCATGAAGC TTAAGCTAGT CTAGAACTAG AGATACTTCT GCTTCAAGCT
  CCCCAAACAT TCTGTTTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47239292	NES11408892	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32972164					SNP	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239292	NES11408892	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101044737 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1464 bp proximal
Rr258865	regulatory region 258865	937 bp distal
Rr264939	regulatory region 264939	1863 bp proximal
Rr265846	regulatory region 265846	1338 bp distal