rs32972169 SNP Detail

Summary

• ID
  rs32972169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101044813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACAGCT TTGTGTTTCA
  AAATTTAATA TGTAGCCCTA GTACTTTGAT TATACATTAT GTACTTCCAG ACTGCTAAAT
  TTTCAAATAA TAATCTGAAT AACTCAGATT CATGGAGAAA AGGAGGAAAA TATTACCATA
  CTCAATGTCT TTGAAAGACT TTTTTTCCAG GGGGCAGGGG AAACAATTAC TAGAGGTCAA
  R
  CCCACTCACA ATAACTTTTT AAGTTTCCTT TTCTTCTCTT TTGAGAAAGG GTCTTTCATG
  AAGCTTAAGC TAGTCTAGAA CTAGAGATAC TTCTGCTTCA AGCTCCCCAA ACATTCTGTT
  TACCAGAAAG ACTATAAATT TATGCCATTT AATTTTCTAC TGGACAATAA CCCATTTTAT
  GGGAAAAACA AATACTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47239298	NES11408894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32972169					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239298	NES11408894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101044813 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	1388 bp proximal
Rr258865	regulatory region 258865	1013 bp distal
Rr264939	regulatory region 264939	1787 bp proximal
Rr265846	regulatory region 265846	1414 bp distal