rs32972958 SNP Detail

Summary

• ID
  rs32972958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101045991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTGAG TTCCAGGACA
  GCCAGGGCTA TAAAGAGAAA CCCTGTCTCG AAAAACCAAA AAAAAAAAAA AAAAAAAAAG
  AATAAAACAG CATTACAGAG ACCAAAGCAT AAATCCACTG TAAGTAGCTG TAAGTGCTTC
  CAGTTGTAGG CTAGATTTCC CACTAAAATA ACAGATCACC ACCCCAGGCT GAACTTGTAC
  Y
  AACCTACAAT TAGCACCTCA GGCTCGAAAT TACCTATAAG ACATGGCTAA TTATATTACC
  TAAATTTGAG AATGGTTTTA AGAATTATGT CTGTAAATAC AAATGAATTG CTTAAAGAGG
  CCCTGACACA CACATAGGAG GTACTCAATA AACTTAAACT ATTACTAATC TTACTTGGAA
  TTTATCTGTT AAGGAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47239307	NES11408832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32972958					SNP	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239307	NES11408832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101045991 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	210 bp proximal
Rr264939	regulatory region 264939	609 bp proximal