rs32973665 SNP Detail

Summary

• ID
  rs32973665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140427152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGACTCG CTGCCTAAAA
  R
  CCTTTTAAAG GCACCCTCAG CGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45720533	mCV23725052	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147709705	ENSMUSSNP1446513	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs32973665					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140427152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	within coordinates
Cpgi15195	CpG island 15195	1224 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	32 bp upstream
Rcc2	regulator of chromosome condensation 2	700 bp upstream
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	within coordinates
Rr603518	regulatory region 603518	210 bp proximal
Rr603519	regulatory region 603519	711 bp proximal
Rr603520	regulatory region 603520	1419 bp proximal
Rr603521	regulatory region 603521	1569 bp proximal
Tssr39970	transcription start site region 39970	25 bp upstream
Tssr39971	transcription start site region 39971	94 bp upstream
Tssr39972	transcription start site region 39972	123 bp upstream
Tssr39973	transcription start site region 39973	145 bp upstream
Tssr39974	transcription start site region 39974	494 bp upstream
Tssr39975	transcription start site region 39975	630 bp upstream
Tssr39976	transcription start site region 39976	646 bp upstream
Tssr39977	transcription start site region 39977	761 bp upstream
Tssr39978	transcription start site region 39978	1585 bp upstream
Tssr39979	transcription start site region 39979	1606 bp upstream
Tssr39980	transcription start site region 39980	1625 bp upstream
Tssr39981	transcription start site region 39981	1669 bp upstream
Tssr39982	transcription start site region 39982	1681 bp upstream
Tssr39983	transcription start site region 39983	1767 bp upstream
Tssr39984	transcription start site region 39984	1992 bp upstream
Tssr44270	transcription start site region 44270	191 bp upstream
Tssr44271	transcription start site region 44271	158 bp upstream
Tssr44272	transcription start site region 44272	18 bp upstream
Tssr44273	transcription start site region 44273	1228 bp downstream