rs32973739 SNP Detail

Summary

• ID
  rs32973739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101047287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTGGGAA GATAGGGACA
  AGAGGATCGT GAACTTCCAT ATTTTGGGCT ACACACAATG TTTGATTCTA GTCTGGTACT
  ACAGGAGACT CTTTCCAAAA AACCAGAAGG ATCTTTGCAT AATCAAATAA AGCACACTGG
  TGTGAGTATG GTTACATGTA TTAGTTCTGA AATTCAAGCT TACATCTAGT TAAATCTCAC
  R
  ATTACATTGG GTCTTAGAGG CAGTTCAGTG GTAGAGCACT GCCTAGCATG CTCAAGTCCC
  TGTGTGGATT CCATTCCCAG TTAGCCCATC CTCACAATAA GCTTAACCCT GAAACCCACA
  CTTCCACTTT ACTGTAAGGA AAGTTTCCAC ATGTACAAAC ATGCAGAGGT GATTACGTGA
  CTGTCACAAA CACATTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47239319	NES11408796	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32973739					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47239319	NES11408796	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101047287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	1407 bp proximal
D130020L05Rik	RIKEN cDNA D130020L05 gene	1423 bp upstream
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	887 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	1184 bp upstream
Tssr114723	transcription start site region 114723	1911 bp upstream