rs32975009 SNP Detail

Summary

• ID
  rs32975009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84927222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAAAAG GGAAGGATGG
  AGTTGGGGGA GGGGGCTCTT TCTCAGGGAT ATACCCGTAA CTGTGGAGTC TCCCAGAGGT
  CCCCGGTGGG TGGTTGGGGG AGGGTGCCCG GAAGCCTGGA AAGAGGAGGG GCGCAGACTC
  AGGGGTCACC TAGCCTAGAA TCAGAAAATC TTGTCCACAG CAGCAAGAGG GGATTGGGTG
  W
  GATAAAAGGA GGGACTTCCT AGACTGGAGA AGGTGCAGTA GAAGTGAAGA TTCCTGTTTG
  GCAGGACCCA CCCCCCCCAG AGTACCCAGG CCCATGCCCA TTCCGGATAT GGAGAAAGTT
  GGGCCTGAGT TGGGGGACAG ACTAGTGAGC GTGGGGCGGG CCGCCTCGGG GGCACATGAC
  GGCGGCGCCC GCCCCGCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46218005	mCV24182208	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss145374890	ENSMUSSNP1463225	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs32975009					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84927222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20682	CpG island 20682	1781 bp distal
Cpgi20683	CpG island 20683	within coordinates
Gm26887	predicted gene, 26887	1869 bp upstream
Gm37352	predicted gene, 37352	276 bp upstream
Gm56836	predicted gene, 56836	1395 bp downstream
Gm64014	predicted gene, 64014	within coordinates
Gm64130	predicted gene, 64130	544 bp downstream
Gm65345	predicted gene, 65345	351 bp upstream
Rr186982	regulatory region 186982	1421 bp distal
Rr186983	regulatory region 186983	within coordinates
Tssr2624	transcription start site region 2624	1807 bp downstream
Tssr78372	transcription start site region 78372	242 bp upstream
Tssr78373	transcription start site region 78373	267 bp upstream
Tssr78374	transcription start site region 78374	338 bp upstream
Tssr78375	transcription start site region 78375	1173 bp upstream
Tssr82082	transcription start site region 82082	24 bp downstream
Tssr82083	transcription start site region 82083	137 bp downstream
Tssr82084	transcription start site region 82084	1031 bp downstream
Tssr82085	transcription start site region 82085	1368 bp downstream
Tssr82086	transcription start site region 82086	1390 bp downstream
Tssr82087	transcription start site region 82087	1419 bp downstream