rs32975145 SNP Detail

Summary

• ID
  rs32975145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160207386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG GACCTCGCAC CCGCCCGGGT
  Y
  TCTCTAACTC TGCCCAAGTC TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45220612	mCV24753962	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148147323	ENSMUSSNP4762193	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320593528	CHEV_2_160191202	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32975145					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160207386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12607	CpG island 12607	within coordinates
Gm57434	predicted gene, 57434	within coordinates
Gm74788	predicted gene, 74788	1743 bp upstream
Mafb	MAF bZIP transcription factor B	within coordinates
Rr180	regulatory region 180	within coordinates
Rr55988	regulatory region 55988	within coordinates
Tssr730	transcription start site region 730	571 bp upstream
Tssr21381	transcription start site region 21381	966 bp downstream
Tssr21382	transcription start site region 21382	313 bp upstream
Tssr21383	transcription start site region 21383	764 bp upstream
Tssr21384	transcription start site region 21384	788 bp upstream
Tssr21385	transcription start site region 21385	1879 bp upstream
Tssr27238	transcription start site region 27238	838 bp upstream
Tssr27239	transcription start site region 27239	716 bp upstream
Tssr27240	transcription start site region 27240	1591 bp downstream