rs32977204 SNP Detail

Summary

• ID
  rs32977204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAAAATA CTTTTTGAAT GGGTTCTCTC CGAATGCTGT
  CCAGCAAAGT TCCTAGAACG CCAAAGGCTA CCTTAAAAAA AAAAAAAAAA AAAAAACTGT
  Y
  TGGGGCTTAA ACCTTCTCCA TGACCTTTTC AAGCCCAGAG TGACAAAGCA GTCTTTCAGA
  GAAGTGATGG TTTTTAAGTA ATAACTACAT ACACAGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45220644	mCV22628436	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32977204					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773851 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			836 bp proximal
Gm75308	predicted gene, 75308			762 bp upstream
Rr564422	regulatory region 564422			398 bp proximal
Rr564423	regulatory region 564423			1124 bp proximal
Rr564424	regulatory region 564424			1157 bp proximal
Rr564425	regulatory region 564425			1294 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			25 bp upstream
Tssr26085	transcription start site region 26085			1062 bp downstream
Tssr26086	transcription start site region 26086			1191 bp downstream
Tssr26087	transcription start site region 26087			1222 bp downstream
Tssr26088	transcription start site region 26088			1284 bp downstream
Tssr26089	transcription start site region 26089			1298 bp downstream
Tssr26090	transcription start site region 26090			1936 bp downstream