rs32977309 SNP Detail

Summary

• ID
  rs32977309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92246024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAATAT ATACCTCAAA
  TATGTTCTTT GACATGCAGC ATTGAAGAAT GTAATGATAA GACCACAGAC CATTAGTCTC
  TGCTATGAAG GGCATATAAT ATTTTCCAAA ATTCAGAAAA ATCAGCATTG TCAGGAAGGA
  CACATGAATT GACTCCAGGC AGAGGGTTGT CATATATGAG GCTAAAACAA CAGTTAAAAC
  Y
  TTTAATACTT TCTTTCCTTT AGTCTATAGG CCAATTATCC TTAGAAAGCA GGAATATAAG
  TGAGTCAGTG CACCACAGAA TATTAATAAG CTGAAGTAGA ATAAATAAAA CACACAATTT
  AGGACATAAG AAAATTGTAA CAGAGGAAAA AAAGCATTTG CTATAATCAC AAAAGATTAC
  ATAGGCAACC AGTGAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46755627	NES10731797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32977309					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46755627	NES10731797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92246024 () rs orientation: forward

Symbol	Name	Function Class
Sprr2d	small proline-rich protein 2D	423 bp upstream
Tssr30282	transcription start site region 30282	357 bp upstream
Tssr30283	transcription start site region 30283	415 bp upstream