rs32978107 SNP Detail

Summary

• ID
  rs32978107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92246264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAAAGC AGGAATATAA
  GTGAGTCAGT GCACCACAGA ATATTAATAA GCTGAAGTAG AATAAATAAA ACACACAATT
  TAGGACATAA GAAAATTGTA ACAGAGGAAA AAAAGCATTT GCTATAATCA CAAAAGATTA
  CATAGGCAAC CAGTGAGATC TCACCGAAAC TTAAAACATT GAGTGCTCAC TGAGTCACAG
  R
  TCTCAACGGT GATGATGTCC AGGAACAGGA TATTTCCCAT TTTGTAGAGT CCCAGTCAAG
  CCAGTCATAC ATGCATTTGC ATTTTGGTTT GGAAATTTTG GGCCCTGCCC ATTATCAGTC
  AGATTTGTTC CTACTAGGCT GGCCAGCTTG TCGTATAAAT TGGTCCTTGA CTGTGAGACT
  GCAGACTCCT GGTACTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46755636	NES10731800	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32978107					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46755636	NES10731800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92246264 () rs orientation: forward

Symbol	Name	Function Class
Sprr2d	small proline-rich protein 2D	183 bp upstream
Tssr30282	transcription start site region 30282	117 bp upstream
Tssr30283	transcription start site region 30283	175 bp upstream