rs32978599 SNP Detail

Summary

• ID
  rs32978599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92247414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAGGAA AGGAAAGGAA AAGAAAAGAA AAGGTCTGAA
  ACATAGTAGC CATTCCCAAG GCTGTTGCAA CAGAGTGCTG ACAGGAAAGG GAAAAGCCAA
  Y
  CAGCTCTAAA ATAGGAGTTG GAAAATAATG TTGATGTTCA AAGAGACAAA TGGACTTGAA
  GCTCCAGAGT TCCATCTATC TTCTCTGAAT TGATTGTCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46755648	NES10731751	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32978599					SNP	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46755648	NES10731751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92247414 () rs orientation: forward

Symbol	Name	Function Class
Sprr2d	small proline-rich protein 2D	within coordinates
Tssr30282	transcription start site region 30282	1026 bp downstream
Tssr30283	transcription start site region 30283	961 bp downstream