rs32979161 SNP Detail

Summary

• ID
  rs32979161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84440519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA AGAATTCTGC CTGCCTCTAA
  Y
  TATCCTATGT AGACCAGGCT AGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46218629	mCV23003775	ABI	CRAMUS_MOUSE	f	SNP	C		T	T
ss145360611	ENSMUSSNP3770183	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss322745594	CHEV_8_86237789	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32979161					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84440519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	1020 bp proximal
Ddx39a	DEAD box helicase 39a	1287 bp upstream
Rr382392	regulatory region 382392	within coordinates
Rr401010	regulatory region 401010	1084 bp upstream
Rr666291	regulatory region 666291	637 bp proximal
Rr666292	regulatory region 666292	797 bp proximal
Rr666293	regulatory region 666293	1669 bp proximal
Tssr78284	transcription start site region 78284	1301 bp upstream
Tssr78285	transcription start site region 78285	1337 bp upstream
Tssr78286	transcription start site region 78286	1349 bp upstream
Tssr78287	transcription start site region 78287	1415 bp upstream
Tssr78288	transcription start site region 78288	1614 bp upstream