rs32979896 SNP Detail

Summary

• ID
  rs32979896
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84625962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCGAGTCCAT CACCTGCAGT GTAGTTCTTA CGTTGTGGAA ATCTGCACCG GGCTTTTGCT
  CTCTCCATCA ACCTAAAATT CAATTTTTTT TTTCTTCCCT ACCCACCCCC TCCAAAACCA
  GACGCTTGAG GCGTTTATAG ATACTAACCT CTCCTCCGCT CCTGCAGCCT GGTCAGCTCC
  AGGACCCTGT CCGGTTGCCA AGGCTCTCTC TTCTGTTTGG GGGAGGGGGG CTGTTCTCAT
  CCCATCCTAC CTACGCTCCA GTCCTGGCTT TGCGTCCCTC CCTCGTTTTT TTTTTTAATT
  W
  ATTTATTTAT TTATTTTTTT ATTGTAGGTC TGGTCTCCCA GGGTAGCGGG ATCCACACCA
  CATCCCCTTC CTGTCGCATC ACCCAGGATC CAGATACTGC TTTTACCTGC CGGCTCTGTT
  GCAGCCAGCG CGCGGGATCC TTCCATACCT CAGTCCAGCC CTCATTTTGT CCCTCCCCAC
  CCCACGTCGC TGTTAGGAAG ATGGGGGACA GCCTACGCTC TTGTCAGTCA CTAAGCAGCA
  CTCCCTCCGG CCCTCCTGCA ATCCCGGGTG GGAGACGCTC TGGTCCAGGT CTTTTTTGTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46219187	mCV24180766	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32979896					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84625962 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	772 bp upstream
Cpgi20661	CpG island 20661	1850 bp distal
Cpgi20662	CpG island 20662	52 bp proximal
Gm26721	predicted gene, 26721	within coordinates
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	625 bp upstream
Tssr78301	transcription start site region 78301	755 bp upstream
Tssr78302	transcription start site region 78302	763 bp upstream
Tssr78303	transcription start site region 78303	781 bp upstream
Tssr78304	transcription start site region 78304	1114 bp upstream
Tssr78305	transcription start site region 78305	1259 bp upstream
Tssr78306	transcription start site region 78306	1287 bp upstream
Tssr78307	transcription start site region 78307	1373 bp upstream