rs32980046 SNP Detail

Summary

• ID
  rs32980046
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149411194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTAAGCG TTAGGCATGC
  TTCTAATTAA TTAACATCAT TAACTTCATA GGCTTGTGGG TAAAACGCTT GTAAAAAGTA
  AACTGACCAG AATCACCTCA ATGGTGGAAT CGTCAGTAAT TTCCTTTTTG TGTCTTGTCA
  TGATCATGAT GATGATCATC TTTAAGATAC GGGGATTAAT CCCAGCAGTC AGAAGGGAGA
  S
  GCACCAGGTC TCTGTGAGTT CGAGGCCAGC CTGGTCTACA GAGCTAGTTT GAGGACAGCT
  AGAGCTACAT AGAGAAACCC TATCTTCAAA CAATCAATCC TGGGGATTGC CCCAGAGCTT
  CCTGCATGCT AGGCAGATGT TCCTACCAAC TGAGCTACAT CCTAGCCCAG ATTGTGTACT
  TGGGGCTGAG GTGGCAGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45721069	mCV24954209	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss148031271	ENSMUSSNP3689262	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32980046					SNP	C	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149411194 () rs orientation: forward

Symbol	Name	Function Class
Rr604887	regulatory region 604887	1836 bp distal
Rr604888	regulatory region 604888	1603 bp distal
Rr604889	regulatory region 604889	1084 bp distal
Rr604890	regulatory region 604890	597 bp distal
Rr604891	regulatory region 604891	490 bp proximal
Ube4b	ubiquitination factor E4B	1679 bp downstream