rs32981145 SNP Detail

Summary

• ID
  rs32981145
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCCCT CCCACCACTC
  ACTGCAGTGC TCACCATGGA GCCCCTCCCA CCACTCACTG CAGTGCTCAC CACGGAGCCC
  AGCCTCTGCT TGAGTTTCTC CAGCACCTGG AGGCTGGGAA GTCCAACAGT CTCGCCGCTG
  GCCTGAACAT CCTGTTCAGC GTGGGAAAAA AAATGTTGCT TCTGTTTTAA ATAATCCCTT
  M
  CCATGAGCCA CTGCTCTGAT GGCAAGCTGT CCTTATCTTC AGTCAAGTGT TCCCTAGGGC
  CACACAGTGG TGAGGTCCCT GCAAGAGTCC CTTTAGCCTG GCAGATTTAG GGTCTGGTGA
  TCACACATCC CAGCGGCCAG GTTGCTTCAG CTTGCTTGCC CTGGGCTACG CTCAGGGGAT
  GGCAGGTTTG GAGTTGGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45721340	mCV25035936	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
ss147462737	ENSMUSSNP1232507	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C	C
ss321319093	CHEV_4_130491571	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32981145					SNP	A	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662967 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	1188 bp downstream
Tssr39333	transcription start site region 39333	1173 bp downstream
Tssr39334	transcription start site region 39334	1124 bp downstream
Tssr39335	transcription start site region 39335	1106 bp downstream
Tssr39336	transcription start site region 39336	1090 bp downstream
Tssr39337	transcription start site region 39337	1063 bp downstream
Tssr39338	transcription start site region 39338	1030 bp downstream
Tssr39339	transcription start site region 39339	983 bp downstream
Tssr39340	transcription start site region 39340	935 bp downstream
Tssr39341	transcription start site region 39341	917 bp downstream
Tssr39342	transcription start site region 39342	831 bp downstream
Tssr39343	transcription start site region 39343	810 bp downstream
Tssr39344	transcription start site region 39344	749 bp downstream
Tssr39345	transcription start site region 39345	712 bp downstream
Tssr39346	transcription start site region 39346	697 bp downstream
Tssr39347	transcription start site region 39347	143 bp downstream
Tssr39348	transcription start site region 39348	347 bp upstream
Tssr39349	transcription start site region 39349	392 bp upstream
Tssr43605	transcription start site region 43605	1083 bp upstream
Tssr43606	transcription start site region 43606	824 bp upstream
Tssr43607	transcription start site region 43607	542 bp upstream
Tssr43608	transcription start site region 43608	480 bp downstream