rs32981261 SNP Detail

Summary

• ID
  rs32981261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85325994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GAAAGCTTGG TGGCCAGGCA
  R
  GACCAGGCAT CAGGTCAGCG GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46218271	mCV22697355	ABI	CRAMUS_MOUSE	f	SNP	G			A	G
ss60644351	NES16270734	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		G	G	G		A	G	G		G
ss145390157	ENSMUSSNP2634135	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss322750924	CHEV_8_87123264	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs32981261					SNP	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644351	NES16270734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85325994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit			Intron
				Noncoding-Transcript-Variant
Cpgi20697	CpG island 20697			1216 bp proximal
Gm64375	predicted gene, 64375			within coordinates
Rr666538	regulatory region 666538			874 bp proximal
Tssr78404	transcription start site region 78404			1475 bp downstream
Tssr78405	transcription start site region 78405			1445 bp downstream
Tssr78406	transcription start site region 78406			1995 bp upstream