rs32982558 SNP Detail

Summary

• ID
  rs32982558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70888052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AACTTGGGGC TGTTTCATGG
  Y
  CTGCTTCTTT TCCCAGGCAG TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45221561	mCV24281291	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146738315	ENSMUSSNP5760789	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320335143	CHEV_2_70895765	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32982558					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70888052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			1371 bp distal
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			1894 bp downstream
Rr558663	regulatory region 558663			1846 bp distal
Rr558664	regulatory region 558664			1950 bp distal
Rr558665	regulatory region 558665			1423 bp distal
Tssr18237	transcription start site region 18237			1892 bp downstream